Yesterday a question in the Julia’s Slack channel (request an invite here!) prompted a lively discussion about how to deal with pointers in Julia. As the history of the channel is ephemeral, I wrote this post to keep note of some interesting points.
In the C world, the operation of getting the value of a pointer is called dereferencing. When dealing with C libraries in Julia, we may need to get the value of a pointer into a Julia object. The Julia manual is quite detailed about accessing data in pointers and I warmly recommend reading that first.
Note that, usually, in Julia it’s not possible to “dereference” a pointer in the C-sense, because most of the operations we’re going to see will copy the data into Julia structures.
unsafe_load
is
the generic function to access the value of a pointer and copy it to a Julia
object. However, depending on the specific data types involved, there may be
different and more efficient solutions. For example, you can obtain the value
of the pointer to an array with
unsafe_wrap
,
while for strings there is
unsafe_string
.
Example 1: get the current time
Let’s have a look at a simple time-related example.
julia> result = Ref{Int64}(0)
Base.RefValue{Int64}(0)
julia> ccall((:time, "libc.so.6"), Int64, (Ptr{Int64},), result)
1556838715
julia> result
Base.RefValue{Int64}(1556838715)
By calling the time
function from the C standard library, we have saved in
result
the current number of seconds since the Unix epoch. We now want to
turn this number into an instance of the C struct
tm
. To do this, we can use the
localtime
function. However, if we want to later use the tm
struct in Julia
we need to define a Julia mutable structure with the same layout as the C one
and define the show
method to have a fancy output:
julia> mutable struct Ctm
sec::Cint
min::Cint
hour::Cint
mday::Cint
mon::Cint
year::Cint
wday::Cint
yday::Cint
isdst::Cint
end
julia> function Base.show(io::IO, t::Ctm)
print(io, t.year + 1900, "-", lpad(t.mon, 2, "0"), "-",
lpad(t.mday, 2, "0"), "T", lpad(t.hour, 2, "0"), ":",
lpad(t.min, 2, "0"), ":", lpad(t.sec, 2, "0"))
end
We are now going to use unsafe_load
to copy the result of the call to
localtime
into an instance of the Ctm
structure:
julia> localtime = ccall((:localtime, "libc.so.6"), Ptr{Ctm}, (Ptr{Int64},), result)
Ptr{Ctm} @0x00007f730fe9d300
julia> unsafe_load(localtime)
2019-04-03T00:11:55
julia> dump(unsafe_load(localtime))
Ctm
sec: Int32 55
min: Int32 11
hour: Int32 0
mday: Int32 3
mon: Int32 4
year: Int32 119
wday: Int32 5
yday: Int32 122
isdst: Int32 1
Of course, if you want to deal with dates you can use the
Dates
standard library
instead of playing with system calls. Have also a look at the other
time-related functions in the Base.Libc
module of Julia.
Example 2: copy from a data type to another one
Now that we’ve seen how to use unsafe_load
, we can define the following
function to “dereference” a generic pointer to a Julia object (with the caveat
that we’re copying it’s value to the new object!):
julia> dereference(ptr::Ptr) = unsafe_load(ptr)
dereference (generic function with 1 method)
julia> dereference(T::DataType, ptr::Ptr) = unsafe_load(Ptr{T}(ptr))
dereference (generic function with 2 methods)
This dereference
function has two arguments: the type that will wrap the data,
and the input pointer. The first argument is optional, and defaults to the type
of the data pointed by ptr
. The first method is effectively an alias of the
plain unsafe_load
. The second method is interesting because it allows us to
copy the value of a pointer of a certain data type to an object of another type
with the same memory layout.
For example, let’s define a simple Julia mutable structure called Bar
, get
an instance of it, and its pointer:
julia> mutable struct Bar
x::UInt64
end
julia> b = Bar(rand(UInt64))
Bar(0x55139e3fd61e43a4)
julia> pointer_from_objref(b)
Ptr{Nothing} @0x00007f1f72eb7850
julia> ptr = Ptr{Bar}(pointer_from_objref(b))
Ptr{Bar} @0x00007f1f72eb7850
pointer_from_objref
gave us a pointer to Nothing
(that is, the C void
), we have then casted it
to a pointer to Bar
and assigned this pointer to ptr
. We now define another
data structure with the same memory layout as Bar
and use
dereference
to “dereference” ptr
as an instance of the new structure:
julia> mutable struct Foo
a::UInt16
b::UInt16
c::UInt32
end
julia> f = dereference(Foo, ptr)
Foo(0x43a4, 0xd61e, 0x55139e3f)
Note that
julia> UInt64(f.a) | UInt64(f.b) << 16 | UInt64(f.c) << 32
0x55139e3fd61e43a4
julia> b.x
0x55139e3fd61e43a4
as expected.
Remember that the term “dereference” is a stretch, because data is copied from the pointer. In fact:
julia> dereference(Foo, ptr) |> pointer_from_objref
Ptr{Nothing} @0x00007f1f72a62440
julia> dereference(Foo, ptr) |> pointer_from_objref
Ptr{Nothing} @0x00007f1f72fb3840
julia> dereference(Bar, ptr) |> pointer_from_objref
Ptr{Nothing} @0x00007f1f730054e0
julia> dereference(Bar, ptr) |> pointer_from_objref
Ptr{Nothing} @0x00007f1f73007340
Conclusions
What we’ve seen here is nothing new for programmers already familiar with the C language, but at the same time shows how easy and natural can be to communicate from Julia with C programs.
Special bonus
If you feel really bold and creative, you can even abuse the *
operator to do
very weird things like:
julia> Base.:*(ptr::Ptr) = dereference(ptr)
julia> Base.:*(T::DataType, ptr::Ptr) = dereference(T, ptr)
julia> *(ptr)
Bar(0x55139e3fd61e43a4)
julia> Foo *ptr
Foo(0x43a4, 0xd61e, 0x55139e3f)
julia> Bar *ptr
Bar(0x55139e3fd61e43a4)
However, the *
operator shouldn’t be really used to mock C syntax is an
awkward way (we’re not actually dereferencing and the syntax Foo *ptr
is for
declaration of a pointer rather than actual dereferencing), so don’t tell people
that I told you to use this!